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mega 4.0  (Biotechnology Information)

 
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    Biotechnology Information mega 4.0
    Mega 4.0, supplied by Biotechnology Information, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/product/mega+4%2E0/mega+4+01+program/10__58985_slash_jddb__2023__v01i01__03-39-70-57
    Average 90 stars, based on 1 article reviews
    mega 4.0 - by Bioz Stars, 2026-09
    90/100 stars

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    Article Title: Ascertaining the phylogenetic position of ethnomedicinally important genera Clerodendrum using DNA Barcoding
    Article Snippet: Construction of phylogenetic tree The matK, rps16 and trnL-F region sequences of selected species generated in the present study and the other reference sequences (Table 3) of matK, rps16 and trnL-F regions of different families or subfamilies (six subfamily namely Symphorematoideae, Ajugoideae, Prostantheroideae, Nepetoideae, Scutellarioideae and Lamioideae from Lamiaceae, Acanthaceae) were retrieved from NCBI (National Center for Biotechnology Information) (http:// www.ncbi.nlm.nih.gov) and used to construct phylogenetic tree by means of Molecular Evolutionary Genetics Analysis (MEGA 4.0) [16] software version with neighbour joining (NJ) [17] and UPGMA (Unweighed Pair Group Mean Average) methods after the proper alignment of DNA sequences using CLUSTAL W2 (www.ebi.ac.uk/Tools/clustalw2) and TCoffee (www.ebi.ac.uk/Tools/t-coffee) software.

    Construct:

    Article Title: Ascertaining the phylogenetic position of ethnomedicinally important genera Clerodendrum using DNA Barcoding
    Article Snippet: Construction of phylogenetic tree The matK, rps16 and trnL-F region sequences of selected species generated in the present study and the other reference sequences (Table 3) of matK, rps16 and trnL-F regions of different families or subfamilies (six subfamily namely Symphorematoideae, Ajugoideae, Prostantheroideae, Nepetoideae, Scutellarioideae and Lamioideae from Lamiaceae, Acanthaceae) were retrieved from NCBI (National Center for Biotechnology Information) (http:// www.ncbi.nlm.nih.gov) and used to construct phylogenetic tree by means of Molecular Evolutionary Genetics Analysis (MEGA 4.0) [16] software version with neighbour joining (NJ) [17] and UPGMA (Unweighed Pair Group Mean Average) methods after the proper alignment of DNA sequences using CLUSTAL W2 (www.ebi.ac.uk/Tools/clustalw2) and TCoffee (www.ebi.ac.uk/Tools/t-coffee) software.

    Software:

    Article Title: Ascertaining the phylogenetic position of ethnomedicinally important genera Clerodendrum using DNA Barcoding
    Article Snippet: Construction of phylogenetic tree The matK, rps16 and trnL-F region sequences of selected species generated in the present study and the other reference sequences (Table 3) of matK, rps16 and trnL-F regions of different families or subfamilies (six subfamily namely Symphorematoideae, Ajugoideae, Prostantheroideae, Nepetoideae, Scutellarioideae and Lamioideae from Lamiaceae, Acanthaceae) were retrieved from NCBI (National Center for Biotechnology Information) (http:// www.ncbi.nlm.nih.gov) and used to construct phylogenetic tree by means of Molecular Evolutionary Genetics Analysis (MEGA 4.0) [16] software version with neighbour joining (NJ) [17] and UPGMA (Unweighed Pair Group Mean Average) methods after the proper alignment of DNA sequences using CLUSTAL W2 (www.ebi.ac.uk/Tools/clustalw2) and TCoffee (www.ebi.ac.uk/Tools/t-coffee) software.



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    Phylogenetic relationship among 10 NDV isolates on the basis of F gene nucleotide sequences between position 47 and 435. Sequences were obtained either from the present study or GenBank. The phylogenetic tree was constructed by joining method on MEGA.

    Journal: Veterinary Research Forum : an International Quarterly Journal

    Article Title: Phylogenetic characterization of the fusion genes of the Newcastle disease viruses isolated in Fars province poultry farms during 2009-2011

    doi:

    Figure Lengend Snippet: Phylogenetic relationship among 10 NDV isolates on the basis of F gene nucleotide sequences between position 47 and 435. Sequences were obtained either from the present study or GenBank. The phylogenetic tree was constructed by joining method on MEGA.

    Article Snippet: The nucleotide sequence of the NDV isolates, based on a portion of the F gene cleavage site, was processed by BioEdit software (Version 7.0; Isis Pharmaceuticals, Carlsbad, USA) and Clustal W multiple alignment method, the subsequent phylogenetic analysis was implemented using MEGA software (Version 4.0; Biodesign Institute, Tempe, USA).

    Techniques: Construct